Process measurement files in selected batch directories

Choose which batches to process by selecting the directory where the measurement files are stored.

Usage

screeningSelectedBatches(
  msrawfileIndex,
  batchDirs,
  saveDirectory,
  numParallel = 1,
  screeningType = "dbas"
)

Arguments

msrawfileIndex

Name of index where processing information is stored

batchDirs

Directory of measurement files (recursive, multiple permitted)

saveDirectory

Location where files will be saved. Directory will be created. Warning: files may be overwritten if the directory already exists

numParallel

For local parallel processing via future

screeningType

either 'dbas' or 'nts' for library screening and non-target-screening, respectively